PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010535415.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 173aa    MW: 19485.2 Da    PI: 5.6956
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010535415.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.74.6e-073073344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      WT+ E + + da + +  +   +W ++a++++ g+t  +++  +
   XP_010535415.1 30 TWTAAENKAFEDALAVYDDDtpdRWQKVAAMIP-GKTVGDVIKQY 73
                     5*****************99*************.***99998776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007176.5E-72779IPR001005SANT/Myb domain
CDDcd001674.37E-63076No hitNo description
PfamPF002492.0E-53073IPR001005SANT/Myb domain
SuperFamilySSF466898.61E-113085IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MEILRPTAHV SGGNWILPEE TVKNSSTAAT WTAAENKAFE DALAVYDDDT PDRWQKVAAM  60
IPGKTVGDVI KQYTELEADV INIEAGLVPV PGYITSPFTL DWAGGYNGLK PVGSKRSPAA  120
RPPEHERKKG VPWTEEEHKH LQRLWLEESY EDVVVIRLYK IWFCIYMKKG KGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-1731961176RADIALIS
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00568DAPTransfer from AT5G58900Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010535415.11e-126PREDICTED: transcription factor DIVARICATA isoform X2
SwissprotQ8S9H77e-51DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLM4CRA05e-69M4CRA0_BRARP; Uncharacterized protein
STRINGBra006741.1-P1e-68(Brassica rapa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58900.12e-66Homeodomain-like transcriptional regulator